Match details
Record ID: |
MG525004.1 |
Database: |
nt |
Go to original record |
Description: |
Cornus controversa chloroplast, complete genome. |
Taxon: |
Cornus controversa |
Original size: |
158668 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49887 |
50481 |
+ |
595 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ccgaaaacaa acaaaggttc
151 agaaagcgaa aataaaaaaa ggataggtgc agagactcaa tggaagctgt
201 tctaacaaat ggagttgact acgttgcgtt ttagaattag aagaatcttt
251 tcatcgaaac ttcagaaagg atgaaggata aaactatata catacgtata
301 cgtactgaaa tattatatca aatgattaat gacaacacga atctgtatct
351 gtagtttttt atatgaaaaa tcgaagaatt gttgtgaatc gattccaaat
401 tgaagaaaga atcaaatatt aattgatcaa atcattcact ccatagtcgg
451 atagatcttt taaagaactg attaatcgaa cgagaataaa gatagagtcc
501 cattctacat gtcaataccg acaacaatga aatttatagt aagaggaaaa
551 tccgtcgatt ttagaaatcg tgagggttca agtccctcta tcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
595 |
576 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.