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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LT558635.1 nt Brachypodium distachyon chloroplast... 135186 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558636.1 nt Brachypodium distachyon chloroplast... 135186 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT996892.1 nt Tripsacum dactyloides var. meridion... 141012 bp Tripsacum dactyloides var. meridionale QL-PLN-00-007 532 bp View
LT996893.1 nt Tripsacum dactyloides genome assemb... 141030 bp Tripsacum dactyloides QL-PLN-00-007 526 bp View
LT996916.1 nt Andropogon virginicus genome assemb... 140665 bp Anatherum virginicum QL-PLN-00-007 525 bp View
LT996927.1 nt Lagrezia sp. Kiefer 9498 trnT-trnL ... 1068 bp Lagrezia sp. Kiefer 9498 QL-PLN-00-007 600 bp View
LT996928.1 nt Amaranthus sp. MW-2265 trnT-trnL in... 1096 bp Amaranthus sp. MW-2265 QL-PLN-00-007 613 bp View
LY263990.1 emblrelpat KR 1020160087419-A/15: MARKER FOR D... 588 bp Fagopyrum tataricum QL-PLN-00-007 577 bp View
M13662.1 nt Sorghum bicolor chloroplast split L... 862 bp Sorghum bicolor QL-PLN-00-007 523 bp View
MF035971.1 nt Arundo donax isolate Teisher95 chlo... 137172 bp Arundo donax QL-PLN-00-007 621 bp View
MF035972.1 nt Arundo donax isolate Teisher96 chlo... 137172 bp Arundo donax QL-PLN-00-007 621 bp View
MF035981.1 nt Eragrostis tef isolate SRR1463402 c... 134310 bp Eragrostis tef QL-PLN-00-007 616 bp View
MF035988.1 nt Molinia caerulea isolate Teisher100... 137622 bp Molinia caerulea QL-PLN-00-007 617 bp View
MF035989.1 nt Molinia caerulea isolate Teisher98 ... 137609 bp Molinia caerulea QL-PLN-00-007 617 bp View
MF035990.1 nt Monachather paradoxus isolate Colum... 137521 bp Monachather paradoxus QL-PLN-00-007 616 bp View
MF035991.1 nt Monachather paradoxus isolate Lazar... 137652 bp Monachather paradoxus QL-PLN-00-007 615 bp View
MF035995.1 nt Phragmites australis isolate GRIN c... 137704 bp Phragmites australis QL-PLN-00-007 617 bp View
MF035996.1 nt Phragmites australis isolate Teishe... 137686 bp Phragmites australis QL-PLN-00-007 617 bp View
MF061222.1 nt Palmerella debilis subsp. serrata p... 164787 bp Palmerella debilis subsp. serrata QL-PLN-00-007 583 bp View
MF066248.1 nt Oldeania humbertii voucher 15CS1083... 140046 bp Oldeania humbertii QL-PLN-00-007 614 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.