Match details
Record ID: |
MF035995.1 |
Database: |
nt |
Go to original record |
Description: |
Phragmites australis isolate GRIN chloroplast, complete genome. |
Taxon: |
Phragmites australis |
Original size: |
137704 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48831 |
49447 |
+ |
617 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaggt ggttctcaaa
151 ctagaaccca aagggaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aggtaattac gttgtgttgg tagtgaaact ccctctaaat
251 tagagaaaga agggctttat acatctaata cacacctata gatactgaca
301 tagcaaatga ttaatcacag aacccatatc ataatatagg ttctttattt
351 atttattttt tagaatgaaa ttaggaatga ttatgaaata gaaaattctg
401 aattttttta gaattgttgt gaatccattc caatcgaata ttgagtaatc
451 aaatccttca attcattgtt tttgagatct tttaaaaagt ggattaatcg
501 gacgaggata aagagagagt cccattctac atgtcaatac tgacaacaat
551 gaaatttcta gtaaaaggaa aatccgtcga ctttataagt cgtgagggtt
601 caagtccctc tatcccc
View other 8 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
617 |
598 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.