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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 617 bp 
1     cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51    acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaat
101   gggcaatcct gagccaaatc ccttttttga aaaaacaggt ggttctcaaa
151   ctagaaccca aagggaaagg ataggtgcag agactcaatg gaagctgttc
201   taacgaatcg aggtaattac gttgtgttgg tagtgaaact ccctctaaat
251   tagagaaaga agggctttat acatctaata cacacctata gatactgaca
301   tagcaaatga ttaatcacag aacccatatc ataatatagg ttctttattt
351   atttattttt tagaatgaaa ttaggaatga ttatgaaata gaaaattctg
401   aattttttta gaattgttgt gaatccattc caatcgaata ttgagtaatc
451   aaatccttca attcattgtt tttgagatct tttaaaaagt ggattaatcg
501   gacgaggata aagagagagt cccattctac atgtcaatac tgacaacaat
551   gaaatttcta gtaaaaggaa aatccgtcga ctttataagt cgtgagggtt
601   caagtccctc tatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AY651843.1 nt Phragmites australis tRNA-Leu gene ... 991 bp Phragmites australis QL-PLN-00-007 617 bp View
KC989616.1 nt Phragmites australis trnT-trnL inte... 1188 bp Phragmites australis QL-PLN-00-007 617 bp View
MT576633.1 nt Phragmites australis isolate DR chl... 137647 bp Phragmites australis QL-PLN-00-007 617 bp View
MT576634.1 nt Phragmites australis isolate SR chl... 137660 bp Phragmites australis QL-PLN-00-007 617 bp View
KJ825856.1 nt Phragmites australis chloroplast, c... 137614 bp Phragmites australis QL-PLN-00-007 617 bp View
OY282639.1 nt Phragmites australis genome assembl... 137672 bp Phragmites australis QL-PLN-00-007 617 bp View
MF035995.1 nt Phragmites australis isolate GRIN c... 137704 bp Phragmites australis QL-PLN-00-007 617 bp View
MF035996.1 nt Phragmites australis isolate Teishe... 137686 bp Phragmites australis QL-PLN-00-007 617 bp View
KX229727.1 nt Phragmites australis voucher RSA:D.... 137612 bp Phragmites australis QL-PLN-00-007 617 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.