Match details
Record ID: |
MF035988.1 |
Database: |
nt |
Go to original record |
Description: |
Molinia caerulea isolate Teisher100 chloroplast, complete genome. |
Taxon: |
Molinia caerulea |
Original size: |
137622 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48571 |
49187 |
+ |
617 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagt ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aggtaattac gttgtgttgg tagtgaaact ccctctaaat
251 tagagaaaga agggctttat acatctaata cacacctata gatactgaca
301 tagcaaacga ttaatcacag aacccatatc ataatatagg ttctttattt
351 attgattttt tagaatgaaa ttaggaatga ttatgaaata gaaaattctg
401 aattttttta gaattgttgt gaatccattc caatcgaata ttgagtaatc
451 aaatccttca attcattgtt tttgagatct tttaaaaagt ggattaatcg
501 gacgaggata aagagagagt cccattctac atgtcaatac tgacaacaat
551 gaaatttcta gtaaaaggaa aatccgtcga ctttataagt cgtgagggtt
601 caagtccctc tatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
617 |
598 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.