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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY931663.1 nt Parasponia andersonii isolate PanWU... 131722 bp Parasponia andersonii QL-PLN-00-007 590 bp View
KY931664.1 nt Parasponia rigida isolate PriWU20x0... 132286 bp Parasponia rigida QL-PLN-00-007 590 bp View
KY931666.1 nt Trema levigata isolate TleWU50x00 c... 131613 bp Trema levigatum QL-PLN-00-007 589 bp View
KY931667.1 nt Trema orientalis isolate TorRG16x01... 131846 bp Trema orientale QL-PLN-00-007 589 bp View
KY931668.1 nt Trema orientalis isolate TorRG33x02... 131844 bp Trema orientale QL-PLN-00-007 589 bp View
KY931669.1 nt Trema tomentosa isolate TtoWU10x00 ... 128422 bp Trema tomentosum QL-PLN-00-007 589 bp View
KY940844.1 nt Lilium lancifolium chloroplast, com... 152574 bp Lilium lancifolium QL-PLN-00-007 612 bp View
KY972701.1 nt Anisoptera grossivenia isolate KASa... 2079 bp Anisoptera grossivenia QL-PLN-00-007 586 bp View
KY972702.1 nt Anisoptera grossivenia isolate KASa... 2079 bp Anisoptera grossivenia QL-PLN-00-007 586 bp View
KY972703.1 nt Anisoptera laevis isolate 02-0255 t... 2083 bp Anisoptera laevis QL-PLN-00-007 586 bp View
KY972704.1 nt Anisoptera laevis isolate 16-2455 t... 2084 bp Anisoptera laevis QL-PLN-00-007 586 bp View
KY972705.1 nt Anisoptera marginata isolate KASam1... 2079 bp Anisoptera marginata QL-PLN-00-007 586 bp View
KY972706.1 nt Anisoptera marginata isolate 2486 t... 2058 bp Anisoptera marginata QL-PLN-00-007 586 bp View
KY972712.1 nt Cistus laurifolius isolate JH273 tR... 2454 bp Cistus laurifolius QL-PLN-00-007 592 bp View
KY972713.1 nt Cotylelobium burckii isolate KAScb1... 2058 bp Cotylelobium burckii QL-PLN-00-007 579 bp View
KY972720.1 nt Dipterocarpus cf. verrucosus JH-201... 1952 bp Dipterocarpus cf. verrucosus JH-2017 QL-PLN-00-007 607 bp View
KY972732.1 nt Dryobalanops aromatica isolate KASd... 2090 bp Dryobalanops aromatica QL-PLN-00-007 584 bp View
KY972733.1 nt Dryobalanops aromatica isolate KASd... 1997 bp Dryobalanops aromatica QL-PLN-00-007 584 bp View
KY972734.1 nt Dryobalanops beccarii isolate 14-43... 2067 bp Dryobalanops beccarii QL-PLN-00-007 584 bp View
KY972735.1 nt Dryobalanops beccarii isolate 14-43... 2065 bp Dryobalanops beccarii QL-PLN-00-007 583 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.