Match details
Record ID: |
KY972735.1 |
Database: |
nt |
Go to original record |
Description: |
Dryobalanops beccarii isolate 14-4350 tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; plastid. |
Taxon: |
Dryobalanops beccarii |
Original size: |
2065 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1044 |
1626 |
+ |
583 bp |
|
1 cgaaatcggt agacgctacg gacttaattg tattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aaaaaaaagg
101 gcaatcctga gccaaatcct gtttaaaaaa gcgttcaaaa agaaatagga
151 taggtgcaga gactcaatgg aagttgttcg aacaaatggg gttgaccgct
201 tttgcgttgg taaaagaata cttctatcga aacttcagca aggataaaca
251 tatagaatac gtaatgaaaa attatctcaa aaaaaacgac tgggacacct
301 attcttttga tttctatttt tttataggtt atagcaaaaa gaattatatg
351 aaaaatcaaa agaatcgttg tgaatcgatt tcaaattgaa gaaagaatcg
401 aatagaatat tcattaataa aaccattcac tccatagtct gataaatcaa
451 tgattaattg gacgagaata aagatagagt cccattctac atgtcaatat
501 caataccgac aacaatgaaa tttatagtaa gaggaaaatc cgtcgacttt
551 aaaaatcgtg agggttcaag tccctctatc ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.63e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
583 |
564 |
2.63e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.