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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KM103378.1 nt Oryza barthii voucher IRGC104574 ch... 134585 bp Oryza barthii QL-PLN-00-007 615 bp View
KM103379.1 nt Oryza barthii voucher WAB0028976 ch... 134678 bp Oryza barthii QL-PLN-00-007 615 bp View
KM103380.1 nt Oryza barthii voucher WAB0028903 ch... 134678 bp Oryza barthii QL-PLN-00-007 615 bp View
KM103381.1 nt Oryza barthii voucher WAB0028952 ch... 134613 bp Oryza barthii QL-PLN-00-007 615 bp View
KM200029.1 nt Cuatresia colombiana tRNA-Leu (trnL... 1125 bp Cuatresia colombiana QL-PLN-00-007 571 bp View
KM200031.1 nt Cestrum longiflorum tRNA-Leu (trnL)... 1065 bp Cestrum longiflorum QL-PLN-00-007 576 bp View
KM200033.1 nt Capsicum lycianthoides tRNA-Leu (tr... 945 bp Capsicum lycianthoides QL-PLN-00-007 571 bp View
KM386520.1 nt Eriosemopsis subanisophylla voucher... 1686 bp Eriosemopsis subanisophylla QL-PLN-00-007 552 bp View
KM386521.1 nt Eriosemopsis subanisophylla voucher... 1686 bp Eriosemopsis subanisophylla QL-PLN-00-007 552 bp View
KM386522.1 nt Eriosemopsis subanisophylla voucher... 1686 bp Eriosemopsis subanisophylla QL-PLN-00-007 552 bp View
KM487699.1 nt Sarcandra glabra tRNA-Leu (trnL) ge... 991 bp Sarcandra glabra QL-PLN-00-007 568 bp View
KM487700.1 nt Chloranthus spicatus tRNA-Leu (trnL... 1020 bp Chloranthus spicatus QL-PLN-00-007 577 bp View
KM487701.1 nt Chloranthus serratus tRNA-Leu (trnL... 1010 bp Chloranthus serratus QL-PLN-00-007 570 bp View
KM487702.1 nt Chloranthus henryi tRNA-Leu (trnL) ... 1010 bp Chloranthus henryi QL-PLN-00-007 570 bp View
KM522848.1 nt Diospyros sp. LHM-2015 chloroplast,... 157321 bp Diospyros sp. LHM-2015 QL-PLN-00-007 586 bp View
KM524037.1 nt Alopecurus aequalis voucher US:Pete... 1722 bp Alopecurus aequalis QL-PLN-00-007 565 bp View
KM524038.1 nt Alopecurus arundinaceus voucher CAN... 1775 bp Alopecurus arundinaceus QL-PLN-00-007 620 bp View
KM524039.1 nt Alopecurus davisii voucher CAN:Gill... 1769 bp Alopecurus davisii QL-PLN-00-007 614 bp View
KM524040.1 nt Alopecurus gerardii voucher CAN:Gil... 1773 bp Alopecurus gerardii QL-PLN-00-007 618 bp View
KM524041.1 nt Alopecurus glacialis voucher MO:Abd... 1776 bp Alopecurus glacialis QL-PLN-00-007 621 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.