Match details
Record ID: |
KM487700.1 |
Database: |
nt |
Go to original record |
Description: |
Chloranthus spicatus tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Chloranthus spicatus |
Original size: |
1020 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
577 |
+ |
577 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ctattttcgt aaagggttta gaaagcgaaa
151 ataatcaaaa ggataggtgc agagactcaa tggaagctgt tctaacgaat
201 ggagttgact gcgttgcgtt ggtagaggaa tccttctatc gaaattgcag
251 aaaggcagaa aggatgatct tatatatgat atatgatacg tactaaaata
301 tcaaatgatt aattaagacc cgaatccata tttttttata tgaaaaattt
351 catagttctt gtgaatcgat tcgaagttga aggaagaatc gaatattcag
401 tgatcaaatc attcacttca gagtctgatt ctgatagatt tttgaagaat
451 ttttgaatca gacgagaata aagatagagt cccattctac atgtcaatac
501 cgacaacaat gaaatttata gtaagaggaa aatccgtcga ccttagaaat
551 cgtgagggtt caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.60e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
577 |
558 |
2.60e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.