Match details
Record ID: |
KM522848.1 |
Database: |
nt |
Go to original record |
Description: |
Diospyros sp. LHM-2015 chloroplast, complete genome. |
Taxon: |
Diospyros sp. LHM-2015 |
Original size: |
157321 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49405 |
49990 |
+ |
586 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgattt tcgaaaacaa acaaagattc
151 agaaagcgaa aataaaaaaa aggataggtg cagagactca atggaagctg
201 ttctaacaaa tggagttgac tgcgttggta gaggaatcct tccatcgaaa
251 ttttcgaaag gatgaatgag aaacctatat acatacgcat acgtactgaa
301 atactatagc aaacgattaa tgacgaccca aatctgtatg cgtatttttt
351 ttatatgaaa atggaagaat tgttgcgaat cgattcgaca ttgaataaag
401 aattgactat tcattgatca aatcatttac tccatagtct gatagatctt
451 ttgaagaact aattaatcgg acgagaataa agatagagtc ccattctaca
501 tgtcaatacc gacaacaatg aaatttatag taagaggaaa atccgtcgac
551 tttaaaaatc gtgagggttc aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.64e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
586 |
567 |
2.64e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.