Match details
Record ID: |
KM487702.1 |
Database: |
nt |
Go to original record |
Description: |
Chloranthus henryi tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Chloranthus henryi |
Original size: |
1010 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
570 |
+ |
570 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ctattttcgt aaagggttta gaaagcgaaa
151 ataatcaaaa ggataggtgc agagactcaa tggaggctgt tctaacgaat
201 ggagttgact gcgttgcgtt ggtagaggaa tccttctatc gaaattgcgg
251 aaaggcagaa aggatgatct tatatacgat acgtactaaa atatcaaatg
301 attaattaag acccgaatcc atattttttt atatgaaaaa tttcatagtt
351 cttgtgaatc gattcgaagt tgaaggaaga atcgaatatt cagtgatcaa
401 atcattcact tcagagtctg attctgatag atttttgaag aatttttgaa
451 tcagacgaga ataaagatag agtcccattc tacatgtcaa taccgacaac
501 aatgaaattt atagtaagag gaaaatccgt cgaccttaga aatcgtgagg
551 gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
570 |
551 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.