Match details
Record ID: |
KM200033.1 |
Database: |
nt |
Go to original record |
Description: |
Capsicum lycianthoides tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Capsicum lycianthoides |
Original size: |
945 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
572 |
+ |
571 bp |
|
1 cgaaatcggt agacgctacg gacttaattc gattgagcct tggtatggaa
51 acttactaag tgatcacttt caaattcaga gaaaccctgg aatgaacaaa
101 aatgggcaat cctgagccaa atcctgtttt ctgaaaacaa ataaaggttc
151 agaaaaaaag gataggtgca gagactcaat ggaagctatt ctaacaaatg
201 gagttaaatg tgttggtaga ggaatcttta catcgaaact tcagaaagaa
251 aaagaatgaa gtgagggata aacgtatata catacgtatt gaatactata
301 tcaaatgatt aatgacgacc cgaatcccta ttttttctat aaaaaataga
351 agaattggtg tgaatcgatt ctacattgaa gaaagaatcg aatattcatt
401 gatcaaatca ttcactccat agtctgatag atcctttgaa gaactgatta
451 atcggacgag aataaagata gagtcccgtt ctacatgtca ataccggcaa
501 caatgaaatt tatagtaaga ggaaaatccg tcgactttta aaatcgtgag
551 ggttcaagtc cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
571 |
552 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.