Match details
Record ID: |
KM524041.1 |
Database: |
nt |
Go to original record |
Description: |
Alopecurus glacialis voucher MO:Abdaladze et al. 429 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Alopecurus glacialis |
Original size: |
1776 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
820 |
1440 |
+ |
621 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaagggggtt ctcgaactag
151 aatacaaagg aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 gaatcgagtt aattatgttg tgttgttagt ggaattcctt ctaaattcga
251 gaaagaaggg ctttatacat ctaataaaca cgtatagata ctgacatagc
301 aaacgattaa tcacagaacc tatattataa ttataatata tggttcttta
351 ttctttttta gaatgaaata gaaatgatta tgaaataaaa aattcataat
401 ttttttttta gaattattgt gaatacattc caatcgaata tttagtaatc
451 aaatgcttca attcaaagtt ttgaggtctt taatttaaaa aagtggatta
501 atcggacgag gacaaagaga gagtcccatt ctacatgtca atactgacaa
551 caatgaaatt tctagtaaaa ggaaaatccg tcgactttat aagtcgtgag
601 ggttcaagtc cctctatccc c
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.80e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
621 |
602 |
2.80e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.