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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KF965252.1 nt Riodocea pulcherrima isolate BU013 ... 1691 bp Riodocea pulcherrima QL-PLN-00-007 567 bp View
KF965255.1 nt Rutidea fuscescens isolate AG033 tr... 1692 bp Rutidea fuscescens QL-PLN-00-007 570 bp View
KF965257.1 nt Schizenterospermum sp. Davis 2580 i... 1672 bp Schizenterospermum sp. Davis 2580 QL-PLN-00-007 567 bp View
KF965258.1 nt Schumanniophyton magnificum isolate... 1683 bp Schumanniophyton magnificum QL-PLN-00-007 566 bp View
KF965259.1 nt Schumanniophyton magnificum isolate... 1710 bp Schumanniophyton magnificum QL-PLN-00-007 566 bp View
KF965261.1 nt Sericanthe andongensis isolate AL07... 1771 bp Sericanthe andongensis QL-PLN-00-007 565 bp View
KF965263.1 nt Sphinctanthus microphyllus isolate ... 1649 bp Sphinctanthus microphyllus QL-PLN-00-007 567 bp View
KF965264.1 nt Stachyarrhena heterochroa isolate B... 1650 bp Stachyarrhena heterochroa QL-PLN-00-007 567 bp View
KF965265.1 nt Stenosepala hirsuta isolate BR071 t... 1688 bp Stenosepala hirsuta QL-PLN-00-007 567 bp View
KF965266.1 nt Sukunia pentagonioides isolate BQ03... 1702 bp Atractocarpus pentagonioides QL-PLN-00-007 568 bp View
KF965267.1 nt Tamilnadia uliginosa isolate BQ082 ... 1740 bp Tamilnadia uliginosa QL-PLN-00-007 566 bp View
KF965268.1 nt Tamilnadia uliginosa isolate BR072 ... 1707 bp Tamilnadia uliginosa QL-PLN-00-007 566 bp View
KF965269.1 nt Tarenna buruensis isolate V096 trnT... 1651 bp Tarenna sambucina var. buruensis QL-PLN-00-007 567 bp View
KF965272.1 nt Tocoyena formosa isolate AV025 trnT... 1676 bp Tocoyena formosa QL-PLN-00-007 572 bp View
KF965275.1 nt Vidalasia fusca isolate BR090 trnT-... 1672 bp Vidalasia fusca QL-PLN-00-007 567 bp View
KF965277.1 nt Wendlandia glabrata isolate BY054 t... 1724 bp Wendlandia glabrata QL-PLN-00-007 566 bp View
KH749283.1 emblrelpat Sequence 9 from patent US 9657355. 640 bp unidentified QL-PLN-00-007 532 bp View
KJ000047.1 nt Echinochloa crus-galli var. crus-ga... 139800 bp Echinochloa crus-galli var. crus-galli QL-PLN-00-007 621 bp View
KJ001642.1 nt Setaria italica chloroplast, comple... 138833 bp Setaria italica QL-PLN-00-007 613 bp View
KJ123753.1 nt Rhazya stricta chloroplast, complet... 154736 bp Rhazya stricta QL-PLN-00-007 572 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.