Match details
Record ID: |
KF965264.1 |
Database: |
nt |
Go to original record |
Description: |
Stachyarrhena heterochroa isolate BR077 trnT-trnL intergenic spacer and tRNA-Leu (trnL) gene, partial sequence; chloroplast. |
Taxon: |
Stachyarrhena heterochroa |
Original size: |
1650 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
734 |
1300 |
+ |
567 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 actcactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aagggcaatc ctgagccaaa tcccgttttc cgaaaccaaa ggttcagaaa
151 gtgaaataag ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttggct gcgttagtag agaaatcttt ccatctaaaa ttccgaaagg
251 ataaagtgaa ggataaacgt atatatacgt attgaatact atatcaaatg
301 attaatgacg actcgactga atctgtattt tttatatgaa aacggaagaa
351 ttggtgtgaa tagattccac attgaagaaa gaatcgaata ttcgttgatc
401 aaatgattca ctccatagtc tgatagatct tttcaagaat tgattaatcg
451 gacgagaata aagatagagt cccgttatac atgtcaatgt tggcaacaat
501 gaaatttata gtaagaggaa aatccgtcga ctttaaaaat cgtgagggtt
551 caagtccctc tatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
567 |
548 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.