Match details
Record ID: |
KF965261.1 |
Database: |
nt |
Go to original record |
Description: |
Sericanthe andongensis isolate AL070 trnT-trnL intergenic spacer and tRNA-Leu (trnL) gene, partial sequence; chloroplast. |
Taxon: |
Sericanthe andongensis |
Original size: |
1771 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
809 |
1373 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcataa
151 agtgaaaaaa ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggggttggct gcgttagtag agaaatcttc ccatctaaaa ttccgaaagg
251 ataaagtgaa ggataaacgt atatatgtat tgaatactat atcaaatgat
301 taatgacgac tcgactgaat ctgtattttt tatataaaaa cggaagaatt
351 ggtgtgaata gattccacat tgaagaaaga atcgaatatt cattgatcaa
401 atgattcact ccatagtctg atagatcttt tcaagaattg attaatcgga
451 cgagaataaa gatagagtcc cgttctacat gtcaatgtcg acaacaatga
501 aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca
551 agtccctcta tcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.