Match details
Record ID: |
KF965255.1 |
Database: |
nt |
Go to original record |
Description: |
Rutidea fuscescens isolate AG033 trnT-trnL intergenic spacer and tRNA-Leu (trnL) gene, partial sequence; chloroplast. |
Taxon: |
Rutidea fuscescens |
Original size: |
1692 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
751 |
1320 |
+ |
570 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaacctgga attaataaaa
101 aggggcaatc ctgagccaaa tcccgttttc cgaaaccaaa ggttcagaaa
151 gtgaaaaggg gataggtgca gagactcaac ggaagctgtt ctaacaaatg
201 gagttggctg cgttagtaga gaaatctttc catctaaaat tccgaaaggg
251 taaagtgaaa gataaacgta tatatacgta ttgaatacta tatcaaacaa
301 atgattaatg acgactcgat tgaatctgta ttttttatat gaaaacggaa
351 gaattggtgt gaatagattc cacattgaag aaagaatcga atattcattg
401 atcaaatgat tcactccata gtctgataga tcttttcaag aattgattaa
451 tcggacaaga ataaagatag agtcctgttc tacatgtcaa tgtcggcaac
501 aatgaaattt atagtaagag gaaaatccgt cgactttaaa aatcgtgagg
551 gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
570 |
551 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.