Match details
Record ID: |
KF965259.1 |
Database: |
nt |
Go to original record |
Description: |
Schumanniophyton magnificum isolate BR056 trnT-trnL intergenic spacer and tRNA-Leu (trnL) gene, partial sequence; chloroplast. |
Taxon: |
Schumanniophyton magnificum |
Original size: |
1710 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
775 |
1340 |
+ |
566 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaaa ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttggct gcgttagtag agaaatcttt ccatctaaaa ttccgaaagg
251 taaagtgaag gataaatgta tatatacgta ttgaatacta tatcaaatga
301 ttaatgacga ctcgactgaa tctgtatttt ttatatgaaa acggaagaat
351 tggtgtgaat agattccaca ttgaagaaag aatcgaatat tcattgatca
401 aatgattcac tccatagtct gatagatctt ttcaagaatt gattaattgg
451 acgagaataa agatagagtc ccgttctaca tgtcaatgtc ggcaacaatg
501 aaatttatag taaaaggaaa atccgtcgac tttaaaaatc gtgagggttc
551 aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
566 |
547 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.