Match details
Record ID: |
KF965266.1 |
Database: |
nt |
Go to original record |
Description: |
Sukunia pentagonioides isolate BQ033 trnT-trnL intergenic spacer and tRNA-Leu (trnL) gene, partial sequence; chloroplast. |
Taxon: |
Atractocarpus pentagonioides |
Original size: |
1702 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
761 |
1328 |
+ |
568 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataat
101 aaaggggcaa tcctgagcca aatcccgttt tccgaaacca aaggttcaga
151 aagtgaaaaa aggataggtg cagagactca acggaagctg ttctaacaaa
201 tggagttggc tgcgttagta gagaaatctt tccatctaaa attccgaaag
251 gataaagtga aggataaacg tatatatacg tattgaatac tatatcaaat
301 gattaatgac gactcgactg aatctgtatt ttttatatga aaacggaaga
351 attggtgtga atagattcca cattgaagaa agaatcgaat attcattgat
401 caaatgattc actccatagt ctgatagatc ttttcaagaa ttgattaatc
451 ggacgagaat aaagatagag tcccgttcta catgtcaatg tcggcaacaa
501 tgaaattgat agtaagagga aaatccgtcg actttaaaaa tcgtgagggt
551 tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
568 |
549 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.