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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
FM207120.1 nt Canthium tetraphyllum chloroplast t... 1742 bp Canthium tetraphyllum QL-PLN-00-007 552 bp View
FM207121.1 nt Cremaspora triflora subsp. confluen... 1686 bp Cremaspora triflora subsp. confluens QL-PLN-00-007 567 bp View
FM207123.1 nt Crossopteryx febrifuga chloroplast ... 1716 bp Crossopteryx febrifuga QL-PLN-00-007 568 bp View
FM207126.1 nt Gardenia hansemannii chloroplast tR... 1674 bp Gardenia hansemannii QL-PLN-00-007 550 bp View
FM207127.1 nt Hypobathrum racemosum chloroplast t... 1743 bp Hypobathrum racemosum QL-PLN-00-007 567 bp View
FM207129.1 nt Nematostylis anthophylla chloroplas... 1606 bp Nematostylis anthophylla QL-PLN-00-007 559 bp View
FM207130.1 nt Nematostylis anthophylla chloroplas... 1576 bp Nematostylis anthophylla QL-PLN-00-007 559 bp View
FM207131.1 nt Nematostylis anthophylla chloroplas... 944 bp Nematostylis anthophylla QL-PLN-00-007 559 bp View
FM207132.1 nt Nematostylis sp. Razafimandimbison ... 1551 bp Nematostylis sp. Razafimandimbison & Ravelonarivo 616 QL-PLN-00-007 559 bp View
FM207133.1 nt Pavetta abyssinica chloroplast trnT... 1667 bp Pavetta abyssinica QL-PLN-00-007 567 bp View
FM207140.1 nt Scyphiphora hydrophyllacea chloropl... 1707 bp Scyphiphora hydrophyllacea QL-PLN-00-007 566 bp View
FM207144.1 nt Tennantia sennii chloroplast trnT-t... 1604 bp Tennantia sennii QL-PLN-00-007 567 bp View
FM207147.1 nt Wendlandia tinctoria chloroplast tR... 1744 bp Wendlandia tinctoria QL-PLN-00-007 566 bp View
FN376357.1 nt Rhodopentas bussei partial trnL gen... 1660 bp Rhodopentas bussei QL-PLN-00-007 585 bp View
FN386318.1 nt Canthium fadenii trnT-trnL IGS(part... 1664 bp Bullockia fadenii QL-PLN-00-007 552 bp View
FN386319.1 nt Canthium mombazense trnT-trnL IGS(p... 1647 bp Bullockia mombazensis QL-PLN-00-007 551 bp View
FN386320.1 nt Canthium sp. 6 de Block 1100 trnT-t... 1646 bp Canthium sp. 6 de Block 1100 QL-PLN-00-007 551 bp View
FN386321.1 nt Canthium carinatum trnT-trnL IGS(pa... 1377 bp Peponidium carinatum QL-PLN-00-007 552 bp View
FN386322.1 nt Peponidium cystiporon trnT-trnL IGS... 1673 bp Peponidium cystiporon QL-PLN-00-007 552 bp View
FN386323.1 nt Cyclophyllum balansae trnT-trnL IGS... 1651 bp Cyclophyllum balansae QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.