Match details
Record ID: |
FM207129.1 |
Database: |
nt |
Go to original record |
Description: |
Nematostylis anthophylla chloroplast tRNA-Thr gene (partial), trnT-trnL IGS, tRNA-Leu gene, trnL-trnF IGS and tRNA-Phe gene (partial), specimen voucher S Eriksson et al. 977 |
Taxon: |
Nematostylis anthophylla |
Original size: |
1606 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
716 |
1274 |
+ |
559 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggtgaaaaa
151 aggataggtg cagagactca acgggagctg ttctaacaaa tggagttggc
201 tgcgttagta gagaaatctt tccatctaaa attacgaaag gataaagtga
251 aggatagacg tatatatacg tattgaatac tatatcaaat gattaatgag
301 gactcgacta aatttgtatt ttttatatga aaaagggaag aattggtgtg
351 aatagattcc acattgaaga aagaatcgaa tattcattga tcaaatgatt
401 cactccatag tctgatagat cttttcaaga attgattaat cggacgagaa
451 taaagataga gtcccattct acatgtcaat gttggcaaca atgaaattta
501 tagtaagagg aaaatccgtc gactttaaaa atcgtgaggg ttcaagtccc
551 tctatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.52e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
559 |
540 |
2.52e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.