Match details
Record ID: |
FN386320.1 |
Database: |
nt |
Go to original record |
Description: |
Canthium sp. 6 de Block 1100 trnT-trnL IGS(partial), tRNA-Leu gene, and trnL-trnF IGS (partial), specimen voucher BR<BEL>:de Block et al. 1100 |
Taxon: |
Canthium sp. 6 de Block 1100 |
Original size: |
1646 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
779 |
1329 |
+ |
551 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaacctgga attaataaaa
101 aggggcaatc ctgagccaaa tcctgttttc cgaaaccaaa ggttcagaaa
151 gtgaaaaagg gataggtgca gagactcaat ggaagctgtt ctaacaaatg
201 gagttggctg cgttagtaga gaaatctttc catcgaaaat tccgaaagga
251 taaaacgtat acgtattgaa tactatatca aatgattaat gacgactcga
301 ctgaatctgt tttttttata tgaaaatgga agaattggtg tgaatagatt
351 ccacattgaa gaaagaatcg aatattcatt gattaaatga ttcactccat
401 agtctgatag atcttttcaa gaattgatta atcggacgag aataaagata
451 gagtcccgtt ctacatgtca atgtcggcaa caatgaaatt tatagtaata
501 ggaaaatccg tcgactttaa aaatcgtgag ggttcaagtc cctctatccc
551 c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.48e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
551 |
532 |
2.48e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.