Match details
Record ID: |
FM207140.1 |
Database: |
nt |
Go to original record |
Description: |
Scyphiphora hydrophyllacea chloroplast trnT-trnL IGS, tRNA-Leu gene, trnL-trnF IGS and tRNA-Phe gene (partial), specimen voucher S K Bremer et al. 99 |
Taxon: |
Scyphiphora hydrophyllacea |
Original size: |
1707 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
803 |
1368 |
+ |
566 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaag ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttagct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251 ataaagtgaa agataaacgt atatacgtat tgaatactat atcaaatgac
301 gactcggctg aatctgtatt ttttatatga aaatatgaaa acggaagaat
351 tggtgtgaat agattgcaca ttgaagagag aatcgaatat tcattaatta
401 aatgattcac tccatagtct gatagatctt ttcaagaatt gattaatcgg
451 atgagaataa agatagagtc ccgttctaca tgtcaatgtc ggcaacaatg
501 aaatttatag taagaggaaa atccgtcgac tttaaaaatc gtgagggttc
551 aagtccctct atcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
566 |
547 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.