European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU828142.1 nt Agalinis heterophylla isolate TX tR... 1588 bp Agalinis heterophylla QL-PLN-00-007 553 bp View
EU828143.1 nt Agalinis maritima isolate TX tRNA-T... 1671 bp Agalinis maritima QL-PLN-00-007 553 bp View
EU828144.1 nt Agalinis strictifolia isolate TX tR... 1656 bp Agalinis strictifolia QL-PLN-00-007 553 bp View
EU828145.2 nt Agalinis decemloba isolate 6VA tRNA... 1195 bp Agalinis decemloba QL-PLN-00-007 552 bp View
EU828146.1 nt Agalinis decemloba isolate 9NC tRNA... 1583 bp Agalinis decemloba QL-PLN-00-007 552 bp View
EU828147.1 nt Agalinis divaricata isolate 3FL tRN... 1670 bp Agalinis divaricata QL-PLN-00-007 553 bp View
EU828148.1 nt Agalinis divaricata isolate 5FL tRN... 1659 bp Agalinis divaricata QL-PLN-00-007 553 bp View
EU828149.1 nt Agalinis edwardsiana isolate 1TX tR... 1642 bp Agalinis edwardsiana QL-PLN-00-007 554 bp View
EU828150.1 nt Agalinis fasciculata isolate 1LA tR... 1636 bp Agalinis fasciculata QL-PLN-00-007 539 bp View
EU828151.1 nt Agalinis fasciculata isolate 2GA tR... 1586 bp Agalinis fasciculata QL-PLN-00-007 539 bp View
EU828152.1 nt Agalinis fasciculata isolate 4LA tR... 1605 bp Agalinis fasciculata QL-PLN-00-007 539 bp View
EU828153.1 nt Agalinis filicaulis isolate 1AL tRN... 1660 bp Agalinis filicaulis QL-PLN-00-007 551 bp View
EU828154.1 nt Agalinis filicaulis isolate 5FL tRN... 1010 bp Agalinis filicaulis QL-PLN-00-007 551 bp View
EU828155.1 nt Agalinis gattingeri isolate 1LA tRN... 1652 bp Agalinis gattingeri QL-PLN-00-007 552 bp View
EU828156.1 nt Agalinis gattingeri isolate 45MO tR... 1653 bp Agalinis gattingeri QL-PLN-00-007 551 bp View
EU828157.1 nt Agalinis gattingeri isolate 8MO tRN... 1624 bp Agalinis gattingeri QL-PLN-00-007 551 bp View
EU828158.1 nt Agalinis harperi isolate 13FL tRNA-... 1657 bp Agalinis harperi QL-PLN-00-007 550 bp View
EU828159.1 nt Agalinis harperi isolate 14NC tRNA-... 1634 bp Agalinis harperi QL-PLN-00-007 544 bp View
EU828160.1 nt Agalinis heterophylla isolate 5TX t... 1593 bp Agalinis heterophylla QL-PLN-00-007 553 bp View
EU828161.1 nt Agalinis heterophylla isolate 8TX t... 1609 bp Agalinis heterophylla QL-PLN-00-007 553 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.