Match details
Record ID: |
EU828160.1 |
Database: |
nt |
Go to original record |
Description: |
Agalinis heterophylla isolate 5TX tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Agalinis heterophylla |
Original size: |
1593 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
728 |
1280 |
+ |
553 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101 aaagggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttgat tgcgctgata gaggaatgaa acttcagaaa ggatgaagga
251 taaacgtatc tattgaatac tatatcaaaa taaaatgatt gattaatgat
301 ggcccaaatc tgtatctgta tttttgaata cgaaaagtgg aagaattggt
351 gtgaatttct tccataaaga atattcattc atcaaatcat tcactccata
401 gtccgataga tcttttttaa aagatctgat taatcggacg agaataaaga
451 tagagtccca ttctacatgt caataccggc aacaatgaaa tttatagtaa
501 aaggaaaatc cgtcgacttt taaaatcgtg agggttcaag tccctctatc
551 ccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.49e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
553 |
534 |
2.49e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.