Match details
Record ID: |
EU828143.1 |
Database: |
nt |
Go to original record |
Description: |
Agalinis maritima isolate TX tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Agalinis maritima |
Original size: |
1671 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
725 |
1277 |
+ |
553 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101 taaagggcaa tcctgagcca aatcctgttt tcttaaaaca aaagttcaga
151 aaacgaaaaa aaggataggt gcagagactc aatggaagct gttctaacaa
201 acggagttga ttgcgctgat agaggaatga aacttccgaa aggatgaagg
251 ataaacgtat ctatggaata gatatcaaaa tcaaatgatt gattaatgat
301 ggcccaaatc tctatctgta tttttgaata cgaaaagtgg aagaattggt
351 gtgaatttct tccataaaga atattccttc atcaaatcat tcactccgta
401 gtccgataga tctttttaaa aagatctgat taatcggacg agaataaaga
451 tagagtccca ttctacatgt caataccggc aacaatgaaa tttataggaa
501 aaggaaaatc cgtcgacttt aaaaatcgtg agggttcaag tccctctatc
551 ccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.49e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
553 |
534 |
2.49e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.