Amplicon details

Amplicon:

553 bp
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101   taaagggcaa tcctgagcca aatcctgttt tcttaaaaca aaagttcaga
151   aaacgaaaaa aaggataggt gcagagactc aatggaagct gttctaacaa
201   acggagttga ttgcgctgat agaggaatga aacttccgaa aggatgaagg
251   ataaacgtat ctatggaata gatatcaaaa tcaaatgatt gattaatgat
301   ggcccaaatc tctatctgta tttttgaata cgaaaagtgg aagaattggt
351   gtgaatttct tccataaaga atattccttc atcaaatcat tcactccgta
401   gtccgataga tctttttaaa aagatctgat taatcggacg agaataaaga
451   tagagtccca ttctacatgt caataccggc aacaatgaaa tttataggaa
501   aaggaaaatc cgtcgacttt aaaaatcgtg agggttcaag tccctctatc
551   ccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU828143.1 nt Agalinis maritima isolate TX tRNA-T... 1671 bp Agalinis maritima QL-PLN-00-007 553 bp View
EU828168.1 nt Agalinis maritima isolate 2MA tRNA-... 1662 bp Agalinis maritima QL-PLN-00-007 553 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.