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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU544025.1 nt Microcnemum coralloides subsp. anat... 1692 bp Microcnemum coralloides subsp. anatolicum QL-PLN-00-007 613 bp View
EU556528.1 nt Thymus mongolicus isolate G3 tRNA-L... 855 bp Thymus mongolicus QL-PLN-00-007 543 bp View
EU556530.1 nt Thymus mandschuricus isolate HM tRN... 898 bp Thymus mandschuricus QL-PLN-00-007 543 bp View
EU792432.1 nt Alopecurus gerardii voucher Soreng ... 1885 bp Alopecurus gerardii QL-PLN-00-007 618 bp View
EU792433.1 nt Festucella eriopoda voucher Jacobs ... 1834 bp Hookerochloa eriopoda QL-PLN-00-007 620 bp View
EU792434.1 nt Arctagrostis latifolia voucher Arch... 1787 bp Arctagrostis latifolia QL-PLN-00-007 620 bp View
EU792435.1 nt Hookerochloa hookeriana voucher Jac... 1818 bp Hookerochloa hookeriana QL-PLN-00-007 620 bp View
EU792438.1 nt Bellardiochloa variegata voucher So... 1817 bp Bellardiochloa variegata QL-PLN-00-007 620 bp View
EU792439.1 nt Apera interrupta voucher Peterson e... 1830 bp Apera interrupta QL-PLN-00-007 621 bp View
EU792443.1 nt Nicoraepoa subenervis subsp. spegaz... 1752 bp Nicoraepoa subenervis subsp. spegazziniana QL-PLN-00-007 620 bp View
EU792444.1 nt Arctopoa tibetica voucher Olonova 2... 1827 bp Arctopoa tibetica QL-PLN-00-007 618 bp View
EU792445.1 nt Arctopoa tibetica voucher Soreng et... 1903 bp Arctopoa tibetica QL-PLN-00-007 618 bp View
EU792446.1 nt Poa eminens voucher Gillespie 7010-... 1824 bp Arctopoa eminens QL-PLN-00-007 618 bp View
EU792447.1 nt Poa eminens voucher Gillespie 7010-... 1889 bp Arctopoa eminens QL-PLN-00-007 618 bp View
EU792450.1 nt Poa kelloggii voucher Soreng 5962 U... 1821 bp Poa kelloggii QL-PLN-00-007 610 bp View
EU792452.1 nt Poa annua voucher Soreng 7456 US tR... 1785 bp Poa annua QL-PLN-00-007 616 bp View
EU792453.1 nt Poa flabellata voucher Wright 9NSG ... 1875 bp Poa flabellata QL-PLN-00-007 616 bp View
EU792455.1 nt Poa cookii voucher Hennion Gen8 CAN... 1854 bp Poa cookii QL-PLN-00-007 616 bp View
EU792456.1 nt Poa kerguelensis voucher Hennion Ge... 1867 bp Poa kerguelensis QL-PLN-00-007 617 bp View
EU792457.1 nt Poa kerguelensis voucher Hennion Ge... 1866 bp Poa kerguelensis QL-PLN-00-007 617 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.