Match details
Record ID: |
EU792438.1 |
Database: |
nt |
Go to original record |
Description: |
Bellardiochloa variegata voucher Soreng et al. 7519-1 tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Bellardiochloa variegata |
Original size: |
1817 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
853 |
1472 |
+ |
620 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagg gggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ttagtggaat tccttctaaa
251 ttctagaaag aagggcttta tacatctaat aaacacgtat agatactgac
301 atagcaaacg attaatcaca gaacctatat tataatatat ggttctttat
351 tcttttttag aatgaaattt gaaatagaaa tgattatgaa ataaaaaatt
401 cataattttt tttagaatta ttgtgaatac attccaatcg aatatttagt
451 aatcaaatgc ttccattcaa agtttttagg tctttaaaaa agtggattaa
501 tcggacgagg acaaagagag agtcccattc tacatgtcaa tactgacaac
551 aatgaaattt ctagtaaaag gaaaatccgt cgactttata agtcgtgagg
601 gttcaagtcc ctctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.79e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
620 |
601 |
2.79e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.