Match details
Record ID: |
EU556528.1 |
Database: |
nt |
Go to original record |
Description: |
Thymus mongolicus isolate G3 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Thymus mongolicus |
Original size: |
855 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
3 |
545 |
+ |
543 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tagtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggataggtg
151 cagagactca atggaagctg ttctaacaaa tggagttgac tgcgttggta
201 gaggaatctt tccatggaaa ctttataaag gatgaaagat aaacgcatct
251 attgaatact atatcaaatg attaatgttg gcccgaatct atttttttat
301 atgaaaatga aaaaatggaa aaatcggtgt gaatttattt cacgttgaag
351 aaaaaataga atattcatca actcattaac tccataatcc gatagatctt
401 ttaaagaact ttttaatcgg gcgagaataa agatagagtc ccattctaca
451 tgctacatat caataccggc aacaatgaaa tttatagtaa gaggaaaatc
501 cgtcgacttt aaaaatcgtg agggttcaag tccctctatc ccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.44e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
543 |
524 |
2.44e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.