Match details
Record ID: |
EU792455.1 |
Database: |
nt |
Go to original record |
Description: |
Poa cookii voucher Hennion Gen8 CAN tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Poa cookii |
Original size: |
1854 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
862 |
1477 |
+ |
616 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaactagg gggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ttagtggaat tccttctaaa
251 tttgaaaaag aagggcttta tacatctaat aaacacgtat cgatactgac
301 atagcaaacg attaatcaca gaacccatat tataatattg gttctttatt
351 cttttttaga atgaaataga aatgattatg aaataaaaaa ttctgaattt
401 ttttagaatt attgtattgt gaatccattc caatcgaata tttagtaatc
451 aaatccttca attaaaagtt ttgaggtctt taaaaaagtg gattaatcgg
501 acgaggacaa agagagagtc ccattctaca tgtcaatact gacaacaatg
551 aaatttctag taaaaggaaa atccgtcgac tttataagtc gtgagggttc
601 aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
616 |
597 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.