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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EF688835.1 nt Heliotropium taltalense voucher 210... 1011 bp Heliotropium taltalense QL-PLN-00-007 582 bp View
EF688841.1 nt Heliotropium krauseanum voucher 877... 1027 bp Heliotropium krauseanum QL-PLN-00-007 581 bp View
EF688842.1 nt Heliotropium paronychioides voucher... 1000 bp Heliotropium paronychioides QL-PLN-00-007 577 bp View
EF688844.1 nt Heliotropium megalanthum voucher te... 854 bp Heliotropium megalanthum QL-PLN-00-007 582 bp View
EF688848.1 nt Heliotropium filifolium voucher 201... 1029 bp Heliotropium filifolium QL-PLN-00-007 582 bp View
EF688849.1 nt Heliotropium longistylum voucher 20... 1060 bp Heliotropium longistylum QL-PLN-00-007 582 bp View
EF688851.1 nt Cordia decandra voucher 1873 tRNA-L... 1030 bp Cordia decandra QL-PLN-00-007 572 bp View
EU052213.1 nt Taxus wallichiana var. chinensis vo... 861 bp Taxus chinensis QL-PLN-00-007 522 bp View
EU052218.1 nt Taxus wallichiana var. wallichiana ... 881 bp Taxus wallichiana var. wallichiana QL-PLN-00-007 522 bp View
EU052221.1 nt Taxus wallichiana var. wallichiana ... 861 bp Taxus wallichiana var. wallichiana QL-PLN-00-007 522 bp View
EU052222.1 nt Taxus wallichiana var. wallichiana ... 862 bp Taxus wallichiana var. wallichiana QL-PLN-00-007 522 bp View
EU052230.1 nt Taxus wallichiana var. mairei vouch... 861 bp Taxus mairei QL-PLN-00-007 522 bp View
EU052231.1 nt Taxus wallichiana var. mairei vouch... 861 bp Taxus mairei QL-PLN-00-007 522 bp View
EU145538.1 nt Diplospora polysperma isolate Q10 t... 1734 bp Discospermum polyspermum QL-PLN-00-007 565 bp View
EU145539.1 nt Feretia aeruginescens isolate B113 ... 1723 bp Feretia aeruginescens QL-PLN-00-007 567 bp View
EU145540.1 nt Fernelia buxifolia isolate o12 trnT... 1753 bp Fernelia buxifolia QL-PLN-00-007 565 bp View
EU145541.1 nt Pouchetia baumanniana isolate J16 t... 1728 bp Pouchetia baumanniana QL-PLN-00-007 570 bp View
EU145544.1 nt Anthospermum herbaceum isolate H72 ... 1711 bp Anthospermum herbaceum QL-PLN-00-007 591 bp View
EU145571.1 nt Sherardia arvensis isolate aG64 trn... 1513 bp Sherardia arvensis QL-PLN-00-007 583 bp View
EU145573.1 nt Kohautia caespitosa isolate aH72 tr... 1762 bp Kohautia caespitosa QL-PLN-00-007 606 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.