Match details
Record ID: |
EF688844.1 |
Database: |
nt |
Go to original record |
Description: |
Heliotropium megalanthum voucher teillier tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Heliotropium megalanthum |
Original size: |
854 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
583 |
+ |
582 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ccgaaaacaa agaaaggttc
151 agaaagcaaa aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 aaatggggtt gactgcattg gtcgaggaat ctttctatcg agacttcaga
251 aaggatgaag gataaacgta tatacatatg tattcaatac tctatcaaat
301 gaaatgatta atgacgaccc taatctgttc tgtttttttt atgaaaaaaa
351 aaggaagaat tggtgtgaat cgattccaca ttgaagttga agaaagaacc
401 gaatattcat tgatcaaatc actcactcca tagtctgata gttcttttga
451 agaactgatt aatcggacga gaataaagat agagtcccgt tctacatgtc
501 aataccggca acaatgaaat ttatagtaag aggaaaatcc gtcgacttta
551 aaaatcgtga gggttcaagt ccctctatcc cc
View other 14 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.62e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
582 |
563 |
2.62e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.