Amplicon details

Amplicon:

582 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ccgaaaacaa agaaaggttc
151   agaaagcaaa aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201   aaatggggtt gactgcattg gtcgaggaat ctttctatcg agacttcaga
251   aaggatgaag gataaacgta tatacatatg tattcaatac tctatcaaat
301   gaaatgatta atgacgaccc taatctgttc tgtttttttt atgaaaaaaa
351   aaggaagaat tggtgtgaat cgattccaca ttgaagttga agaaagaacc
401   gaatattcat tgatcaaatc actcactcca tagtctgata gttcttttga
451   agaactgatt aatcggacga gaataaagat agagtcccgt tctacatgtc
501   aataccggca acaatgaaat ttatagtaag aggaaaatcc gtcgacttta
551   aaaatcgtga gggttcaagt ccctctatcc cc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
EF688808.1 nt Heliotropium floridum voucher 2838 ... 1052 bp Heliotropium floridum QL-PLN-00-007 582 bp View
EF688809.1 nt Heliotropium inconspicuum voucher 2... 1021 bp Heliotropium inconspicuum QL-PLN-00-007 582 bp View
EF688811.1 nt Heliotropium sclerocarpum voucher 2... 1032 bp Heliotropium sclerocarpum QL-PLN-00-007 582 bp View
EF688818.1 nt Heliotropium sinuatum voucher 2492 ... 1011 bp Heliotropium sinuatum QL-PLN-00-007 582 bp View
EF688812.1 nt Heliotropium eremogenum voucher 257... 1011 bp Heliotropium eremogenum QL-PLN-00-007 582 bp View
EF688821.1 nt Heliotropium huascoense voucher 290... 1012 bp Heliotropium huascoense QL-PLN-00-007 582 bp View
EF688826.1 nt Heliotropium glutinosum voucher 216... 1011 bp Heliotropium glutinosum QL-PLN-00-007 582 bp View
EF688827.1 nt Heliotropium sp. 2159 tRNA-Leu (trn... 1032 bp Heliotropium sp. 2159 QL-PLN-00-007 582 bp View
EF688829.1 nt Heliotropium filifolium voucher 197... 1054 bp Heliotropium filifolium QL-PLN-00-007 582 bp View
EF688831.1 nt Heliotropium floridum voucher 1974 ... 1051 bp Heliotropium floridum QL-PLN-00-007 582 bp View
EF688819.1 nt Heliotropium chenopodiaceum voucher... 1011 bp Heliotropium chenopodiaceum QL-PLN-00-007 582 bp View
EF688844.1 nt Heliotropium megalanthum voucher te... 854 bp Heliotropium megalanthum QL-PLN-00-007 582 bp View
EF688849.1 nt Heliotropium longistylum voucher 20... 1060 bp Heliotropium longistylum QL-PLN-00-007 582 bp View
EF688824.1 nt Heliotropium huascoense voucher 216... 1032 bp Heliotropium huascoense QL-PLN-00-007 582 bp View
EF688848.1 nt Heliotropium filifolium voucher 201... 1029 bp Heliotropium filifolium QL-PLN-00-007 582 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.