Match details
Record ID: |
EU145573.1 |
Database: |
nt |
Go to original record |
Description: |
Kohautia caespitosa isolate aH72 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Kohautia caespitosa |
Original size: |
1762 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
758 |
1363 |
+ |
606 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgggcct tggtatggaa
51 acccgctaag tgagaacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggtaat cctgagccaa atcctatttt ccgaaactaa aaaacaaaga
151 ttcagaaagt gaaaaggggg ataggtgcag agactcaatg gaagctgttc
201 taacaaatgg agttggatgc gttagtcgag aagtccttcc agtaaaaatt
251 cataaagtat aagtgtttaa ggatgaagtg acggataaac atatatacat
301 atatatattg aatagtatat tcaataaatg agtaatgaca gccccaaacg
351 aatctctatt ttttctatga aaaaataaag aatggttgtt aatagattcc
401 acgtttaagt ttaagaaaga atcgaatatt cattgattaa atgattcact
451 ccatagcctg atagatcttt tcaccaactg attaatcaga cgagaataaa
501 gatagagtcc cattttacat gtcaatgccg gcaacaatga aatttattgt
551 taagaggaaa atccgtcgac ttttaaaatc gtgagggttc aagtccctct
601 atcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.73e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
606 |
587 |
2.73e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.