Match details
Record ID: |
EU052218.1 |
Database: |
nt |
Go to original record |
Description: |
Taxus wallichiana var. wallichiana voucher GM-24228 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Taxus wallichiana var. wallichiana |
Original size: |
881 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
522 |
+ |
522 bp |
|
1 cgaaatcggt agacgctacg gacttaatag aattgagcct tggtatggaa
51 acttactaag tgatagcttc caaatacagg ggaaccctgg aatattttga
101 atgggcaatc ctgatccaaa tccgtattat aggaacaata attttatttt
151 ctagaaaagg gataggtgca gagactcaac ggaagatatt ctaacgactt
201 aatatcattt gaatttgaac caatattcta tctacagagt gtagtatgtt
251 attgaaaact ttgaaagtgt tctgtatcat cgttaaaact tgtttcaacg
301 attagaactt gagttgttct aggcttgcct agcttaatga atacttaatt
351 aaagtaattc aattaagaaa taaatagaat ttattctatt tttgaattat
401 tggacgagga taaagataga gtccaattct acatgtaaat gccaacaaca
451 acaatgcaaa ttgcagtagt cggaaaatcc gttggtttta taaaccgtga
501 gggttcaagt ccctctatcc cc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.35e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
522 |
503 |
2.35e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.