European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EF205632.1 nt Peponidium comorense trnT-trnL inte... 1702 bp Peponidium comorense QL-PLN-00-007 552 bp View
EF205633.1 nt Psydrax dicoccos trnT-trnL intergen... 1652 bp Psydrax dicoccos QL-PLN-00-007 552 bp View
EF205634.1 nt Psydrax paradoxa trnT-trnL intergen... 1653 bp Psydrax paradoxa QL-PLN-00-007 552 bp View
EF205635.1 nt Pyrostria anjouanensis trnT-trnL in... 1679 bp Pyrostria anjouanensis QL-PLN-00-007 552 bp View
EF367817.1 nt Lepidium draba voucher LEDR_01B tRN... 594 bp Lepidium draba QL-PLN-00-007 594 bp View
EF367818.1 nt Lepidium montanum voucher LEMO_01A ... 594 bp Lepidium montanum QL-PLN-00-007 594 bp View
EF367824.1 nt Lepidium montanum voucher LEMO_04E ... 594 bp Lepidium montanum QL-PLN-00-007 594 bp View
EF367828.1 nt Lepidium montanum voucher LEMO_06A ... 594 bp Lepidium montanum QL-PLN-00-007 594 bp View
EF367841.1 nt Lepidium montanum voucher LEMO_13B ... 594 bp Lepidium montanum QL-PLN-00-007 594 bp View
EF367852.1 nt Lepidium montanum voucher LEMO_20B ... 594 bp Lepidium montanum QL-PLN-00-007 594 bp View
EF367853.1 nt Lepidium montanum voucher LEMO_21A ... 594 bp Lepidium montanum QL-PLN-00-007 594 bp View
EF367911.1 nt Lepidium perfoliatum voucher LEPE_1... 596 bp Lepidium perfoliatum QL-PLN-00-007 596 bp View
EF367912.1 nt Lepidium lasiocarpum voucher LERA_0... 594 bp Lepidium lasiocarpum QL-PLN-00-007 594 bp View
EF395416.1 nt Abies veitchii voucher YU Havill 04... 1457 bp Abies veitchii QL-PLN-00-007 558 bp View
EF395418.1 nt Pseudolarix amabilis voucher A 187-... 1437 bp Pseudolarix amabilis QL-PLN-00-007 562 bp View
EF395419.1 nt Nothotsuga longibracteata voucher P... 1404 bp Nothotsuga longibracteata QL-PLN-00-007 555 bp View
EF395420.1 nt Tsuga canadensis voucher YU Havill ... 1451 bp Tsuga canadensis QL-PLN-00-007 557 bp View
EF395422.1 nt Tsuga caroliniana voucher A 15803 t... 1459 bp Tsuga caroliniana QL-PLN-00-007 557 bp View
EF395423.1 nt Tsuga caroliniana voucher A 19447 t... 1459 bp Tsuga caroliniana QL-PLN-00-007 557 bp View
EF395424.1 nt Tsuga chinensis voucher YU Havill 0... 1474 bp Tsuga chinensis QL-PLN-00-007 572 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.