Match details
Record ID: |
EF395423.1 |
Database: |
nt |
Go to original record |
Description: |
Tsuga caroliniana voucher A 19447 tRNA-Leu (trnL) gene, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Tsuga caroliniana |
Original size: |
1459 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
475 |
1031 |
+ |
557 bp |
|
1 cgaaatcggt agacgctacg gacttgatcg aattgagcct tggtatggaa
51 acctaccaag tgatagcttc caaattcagg gaaccccggg atattttgaa
101 tgggtaatcc tgagccaaat ccggttcata gagacaatgg tttctttcct
151 aggataggaa ggggataggt gcagagactc aatggaagct attctaacga
201 atgaatttca tttggggtcc aatactctat ttatagaacg ctttatttac
251 acctcgaaag tgggaatgtt gtataaaata aaacaacact cgcgatcaga
301 acttgaatcg tttcaagcat tttatttgta agagaaatgc cagatttgag
351 ttgaagtaat gatttgacat taagtaatcc aattatgaac tttctctact
401 ctagataggg agttgaatca gtttttggaa gaatttattg gacgaggata
451 aagatagagt ccaattctac gtgtcaatgt caacaacaat gcaaattgca
501 gtaggaggaa aatccgttgg ctttatagac cgtgaaggtt caagtccctc
551 tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.51e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
557 |
538 |
2.51e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.