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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OV050061.1 nt Oryza rufipogon genome assembly, or... 134543 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV050062.1 nt Oryza rufipogon genome assembly, or... 134514 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV050063.1 nt Oryza rufipogon genome assembly, or... 134540 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV050064.1 nt Oryza rufipogon genome assembly, or... 134502 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV050065.1 nt Oryza rufipogon genome assembly, or... 134515 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV050066.1 nt Oryza rufipogon genome assembly, or... 134536 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV050067.1 nt Oryza rufipogon genome assembly, or... 134537 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV050068.1 nt Oryza rufipogon genome assembly, or... 134507 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV050069.1 nt Oryza rufipogon genome assembly, or... 134536 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV050091.1 nt Oryza rufipogon genome assembly, or... 134553 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OX326955.1 nt Misopates orontium genome assembly,... 152148 bp Misopates orontium QL-PLN-00-007 577 bp View
OX335502.1 nt Musa cultivar 'New-Mu-Nang' complet... 170318 bp Musa ABB Group QL-PLN-00-007 609 bp View
OX335800.1 nt Scutellaria galericulata genome ass... 152565 bp Scutellaria galericulata QL-PLN-00-007 558 bp View
OX344734.1 nt Ballota nigra genome assembly, orga... 151913 bp Ballota nigra QL-PLN-00-007 563 bp View
OX365699.1 nt Musa cultivar 'New-Mu-Nang' complet... 170318 bp Musa ABI Group QL-PLN-00-007 609 bp View
OX397922.1 nt Oryza officinalis genome assembly, ... 134861 bp Oryza officinalis QL-PLN-00-007 615 bp View
OX415247.1 nt Sherardia arvensis genome assembly,... 152730 bp Sherardia arvensis QL-PLN-00-007 583 bp View
OX415257.1 nt Linaria vulgaris genome assembly, o... 156708 bp Linaria vulgaris QL-PLN-00-007 559 bp View
OX422182.1 nt Salvia hispanica genome assembly, o... 151778 bp Salvia hispanica QL-PLN-00-007 564 bp View
OX459124.1 nt Oldenlandia corymbosa var. corymbos... 27831323 bp Oldenlandia corymbosa var. corymbosa QL-PLN-00-007 583 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.