Match details
Record ID: |
OX459124.1 |
Database: |
nt |
Go to original record |
Description: |
Oldenlandia corymbosa var. corymbosa genome assembly, chromosome: 7 |
Taxon: |
Oldenlandia corymbosa var. corymbosa |
Original size: |
27831323 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
12492960 |
12493542 |
- |
583 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgggcct tggtatggaa
51 acccgctaag tgagaacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctatttt ccgaaaacaa aaaacaaagg
151 ttcagaaagg gaaaaagggg ataggtgcag agactcaacg gaagctgttc
201 taacaaatgg agttggatgc gttagtcgat aagtctttcc aggaaaaatt
251 ccttcagtat tttcagtatt taaggataaa gcgaaggata accatatata
301 tacatatgta gtgaatagta tattaaatga gtattgacag cccaaactct
351 tttttctatg aaaaaagaaa gttaatagat tccatgttta agaacgaatc
401 gaatattcat tgatcaaatg attcactcca tagtctgata gatcttttca
451 cgaactgatt aatcagacga gaataaagat agagtcccat tttacatgtc
501 aattccggca acaatgaaat ttatagttaa gaggaaaatc cgtcgacttt
551 taaaatcgtg agggttcaag tccctctatc ccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.63e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
583 |
564 |
2.63e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.