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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR822603.1 nt Phlomoides ornata chloroplast, comp... 151905 bp Phlomoides ornata QL-PLN-00-007 555 bp View
OR822604.1 nt Phlomoides szechuanensis chloroplas... 151953 bp Phlomoides szechuanensis QL-PLN-00-007 555 bp View
OR822605.1 nt Phlomoides tatsienensis chloroplast... 151899 bp Phlomoides tatsienensis QL-PLN-00-007 555 bp View
OR822606.1 nt Phlomoides umbrosa chloroplast, com... 151881 bp Phlomoides umbrosa QL-PLN-00-007 555 bp View
OR823205.1 nt Hydrocotyle vulgaris chloroplast, c... 153165 bp Hydrocotyle vulgaris QL-PLN-00-007 589 bp View
OR823819.1 nt Linaria japonica voucher cKim 2023-... 150660 bp Linaria japonica QL-PLN-00-007 559 bp View
OR832244.2 nt Physostegia virginiana chloroplast,... 152880 bp Physostegia virginiana QL-PLN-00-007 568 bp View
OR866441.1 nt Knorringia sibirica chloroplast, co... 161384 bp Knorringia sibirica QL-PLN-00-007 621 bp View
OR978440.1 nt Alangium chinense chloroplast, comp... 156673 bp Alangium chinense QL-PLN-00-007 584 bp View
OR992089.1 nt Oreocharis qingyunshanensis chlorop... 153485 bp Oreocharis qingyunshanensis QL-PLN-00-007 555 bp View
OU343025.1 nt Patellifolia patellaris genome asse... 151798 bp Patellifolia patellaris QL-PLN-00-007 612 bp View
OV049797.1 nt Oryza rufipogon genome assembly, or... 134536 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049798.1 nt Oryza rufipogon genome assembly, or... 134506 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049799.1 nt Oryza rufipogon genome assembly, or... 134540 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049800.1 nt Oryza rufipogon genome assembly, or... 134587 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049801.1 nt Oryza rufipogon genome assembly, or... 134501 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049802.1 nt Oryza rufipogon genome assembly, or... 134517 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049803.1 nt Oryza rufipogon genome assembly, or... 134501 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049804.1 nt Oryza rufipogon genome assembly, or... 134537 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049805.1 nt Oryza rufipogon genome assembly, or... 134582 bp Oryza rufipogon QL-PLN-00-007 615 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.