Match details
Record ID: |
OR823205.1 |
Database: |
nt |
Go to original record |
Description: |
Hydrocotyle vulgaris chloroplast, complete genome. |
Taxon: |
Hydrocotyle vulgaris |
Original size: |
153165 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48274 |
48862 |
+ |
589 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gcttgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ccgaaaacaa ataacggtgc
151 agaaggcgaa aaggggatag gtgcagagac tcgatggaag ctgttctaac
201 agatgaagtg gactgtgttg cattgataga ggaatccttc cattgaaact
251 tccaaaagga tgaaggataa acgtatatac atacgtatac gtactgaaaa
301 actctatcaa acgattaatg acgacccgaa tctttctttt ttatatgaaa
351 acggaagaat tgttatgaat cgattccata ttgacgaaag aatcgagtat
401 tcattgatca aatcattcac tccataccat atagtctgat atctgataat
451 tcttttgaag aattgattaa tcggacgaga ataaagatag agtcccattc
501 tacatgtcaa taccggcaac aatgaaattt atagtaagag gaaaatccgt
551 cgactttaaa atcgtgaggg ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.65e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
589 |
570 |
2.65e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.