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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR582407.1 nt Indosasa longispicata chloroplast, ... 139749 bp Indosasa longispicata QL-PLN-00-007 614 bp View
OR582422.1 nt Musa acuminata subsp. malaccensis c... 170023 bp Musa acuminata subsp. malaccensis QL-PLN-00-007 594 bp View
OR582423.1 nt Laguncularia racemosa chloroplast, ... 160671 bp Laguncularia racemosa QL-PLN-00-007 598 bp View
OR597577.1 nt Cornus elliptica isolate organ chlo... 157383 bp Cornus elliptica QL-PLN-00-007 588 bp View
OR597578.1 nt Cornus kousa isolate organ chloropl... 157380 bp Cornus kousa QL-PLN-00-007 588 bp View
OR597579.1 nt Cornus hongkongensis subsp. ferrugi... 157291 bp Cornus hongkongensis subsp. ferruginea QL-PLN-00-007 588 bp View
OR597580.1 nt Cornus hongkongensis subsp. melanot... 157288 bp Cornus hongkongensis subsp. melanotricha QL-PLN-00-007 588 bp View
OR597581.1 nt Cornus hongkongensis subsp. tonkine... 156965 bp Cornus hongkongensis subsp. tonkinensis QL-PLN-00-007 594 bp View
OR597582.1 nt Cornus hongkongensis subsp. elegans... 157197 bp Cornus hongkongensis subsp. elegans QL-PLN-00-007 588 bp View
OR597583.1 nt Cornus hongkongensis subsp. gigante... 156980 bp Cornus hongkongensis subsp. gigantea QL-PLN-00-007 594 bp View
OR597584.1 nt Cornus hongkongensis isolate organ ... 156989 bp Cornus hongkongensis QL-PLN-00-007 594 bp View
OR601178.1 nt Rehmannia chingii chloroplast, comp... 153807 bp Rehmannia chingii QL-PLN-00-007 563 bp View
OR603942.1 nt Incarvillea compacta chloroplast, c... 150154 bp Incarvillea compacta QL-PLN-00-007 561 bp View
OR652279.1 nt Salvia miltiorrhiza chloroplast, co... 151394 bp Salvia miltiorrhiza QL-PLN-00-007 530 bp View
OR664113.1 nt Scrophularia ningpoensis isolate XS... 153175 bp Scrophularia ningpoensis QL-PLN-00-007 564 bp View
OR664114.1 nt Scrophularia ningpoensis isolate XS... 153175 bp Scrophularia ningpoensis QL-PLN-00-007 564 bp View
OR666670.1 nt Didymocarpus yuenlingensis chloropl... 153932 bp Didymocarpus yuenlingensis QL-PLN-00-007 550 bp View
OR689485.1 nt Oxalis corniculata tRNA-Leu (trnL) ... 563 bp Oxalis corniculata QL-PLN-00-007 563 bp View
OR689487.1 nt Paspalum dilatatum tRNA-Leu (trnL) ... 617 bp Paspalum dilatatum QL-PLN-00-007 617 bp View
OR689488.1 nt Andropogon glomeratus tRNA-Leu (trn... 525 bp Anatherum glomeratum QL-PLN-00-007 525 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.