Match details
Record ID: |
OR597581.1 |
Database: |
nt |
Go to original record |
Description: |
Cornus hongkongensis subsp. tonkinensis isolate organ chloroplast, complete genome. |
Taxon: |
Cornus hongkongensis subsp. tonkinensis |
Original size: |
156965 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48580 |
49173 |
+ |
594 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ccgaaaacaa acaaaaacaa
151 aggttcggaa aacgaaaata aaaaaagggg ataggtgcag agactcaatg
201 gaagctgttc taacacgtgg agttgactaa gttgtgttgt tagaagaatc
251 ttttttcatc gaaacttcag aaaggatgaa ggagaaaact atatacatac
301 gtatacgtac tgaaatatta tatcaaatga ttactgacga cacgaatctt
351 tattttttta tatgaaaaat caaagaattg ttgtgaatcg atttcaaatt
401 gaagaaagaa tccaatattc attgatcaaa tcattcactc cgtagtctga
451 tatatctttt gaagaactga ttaatcgaac gagaataaag atagagtccc
501 attctacatg tcaataccga caacaatgaa atttatagta agaggaaaat
551 ccgtcgattt tagaaatcgt gagggttcaa gtccctctat cccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
594 |
575 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.