Amplicon details

Amplicon:

594 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ccgaaaacaa acaaaaacaa
151   aggttcggaa aacgaaaata aaaaaagggg ataggtgcag agactcaatg
201   gaagctgttc taacacgtgg agttgactaa gttgtgttgt tagaagaatc
251   ttttttcatc gaaacttcag aaaggatgaa ggagaaaact atatacatac
301   gtatacgtac tgaaatatta tatcaaatga ttactgacga cacgaatctt
351   tattttttta tatgaaaaat caaagaattg ttgtgaatcg atttcaaatt
401   gaagaaagaa tccaatattc attgatcaaa tcattcactc cgtagtctga
451   tatatctttt gaagaactga ttaatcgaac gagaataaag atagagtccc
501   attctacatg tcaataccga caacaatgaa atttatagta agaggaaaat
551   ccgtcgattt tagaaatcgt gagggttcaa gtccctctat cccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR597583.1 nt Cornus hongkongensis subsp. gigante... 156980 bp Cornus hongkongensis subsp. gigantea QL-PLN-00-007 594 bp View
OR597581.1 nt Cornus hongkongensis subsp. tonkine... 156965 bp Cornus hongkongensis subsp. tonkinensis QL-PLN-00-007 594 bp View
OR597584.1 nt Cornus hongkongensis isolate organ ... 156989 bp Cornus hongkongensis QL-PLN-00-007 594 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.