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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OQ791223.1 nt Temochloa sp. CYZ-2023a chloroplast... 139327 bp Temochloa sp. CYZ-2023a QL-PLN-00-007 614 bp View
OQ791224.1 nt Neomicrocalamus prainii chloroplast... 139489 bp Neomicrocalamus prainii QL-PLN-00-007 614 bp View
OQ791225.1 nt Neomicrocalamus sp. CYZ-2023a chlor... 139198 bp Neomicrocalamus sp. CYZ-2023a QL-PLN-00-007 614 bp View
OQ791226.1 nt Temochloa sp. CYZ-2023b chloroplast... 139324 bp Temochloa sp. CYZ-2023b QL-PLN-00-007 614 bp View
OQ791227.1 nt Neomicrocalamus sp. CYZ-2023a chlor... 139214 bp Neomicrocalamus sp. CYZ-2023a QL-PLN-00-007 614 bp View
OQ791228.1 nt Neomicrocalamus sp. CYZ-2023a chlor... 139222 bp Neomicrocalamus sp. CYZ-2023a QL-PLN-00-007 614 bp View
OQ791229.1 nt Bonia levigata chloroplast, complet... 138382 bp Bonia levigata QL-PLN-00-007 613 bp View
OQ810000.1 nt Luffa aegyptiaca chloroplast, compl... 157296 bp Luffa aegyptiaca QL-PLN-00-007 593 bp View
OQ818609.1 nt Elephantopus scaber isolate XSK2022... 151909 bp Elephantopus scaber QL-PLN-00-007 526 bp View
OQ818610.1 nt Elephantopus scaber isolate XSK2022... 151910 bp Elephantopus scaber QL-PLN-00-007 526 bp View
OQ818829.1 nt Phaeanthus vietnamensis tRNA-Leu (t... 576 bp Phaeanthus vietnamensis QL-PLN-00-007 576 bp View
OQ842967.1 nt Paraphlomis koreana voucher KIMJH22... 152128 bp Paraphlomis koreana QL-PLN-00-007 563 bp View
OQ843017.1 nt Sorghum bicolor cultivar Dochna chl... 140644 bp Sorghum bicolor QL-PLN-00-007 523 bp View
OQ848581.1 nt Lapageria rosea chloroplast, comple... 160054 bp Lapageria rosea QL-PLN-00-007 610 bp View
OQ848587.1 nt Ripogonum scandens isolate Rs1 chlo... 160289 bp Ripogonum scandens QL-PLN-00-007 600 bp View
OQ848588.1 nt Ripogonum scandens isolate Rs2 chlo... 160278 bp Ripogonum scandens QL-PLN-00-007 600 bp View
OQ871457.1 nt Trema orientale chloroplast, comple... 157134 bp Trema orientale QL-PLN-00-007 589 bp View
OQ873395.1 nt Panicum virgatum chloroplast, compl... 139497 bp Panicum virgatum QL-PLN-00-007 565 bp View
OQ873396.1 nt Panicum virgatum chloroplast, compl... 139620 bp Panicum virgatum QL-PLN-00-007 614 bp View
OQ873398.1 nt Panicum virgatum chloroplast, compl... 139617 bp Panicum virgatum QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.