Match details
Record ID: |
OQ873396.1 |
Database: |
nt |
Go to original record |
Description: |
Panicum virgatum chloroplast, complete genome. |
Taxon: |
Panicum virgatum |
Original size: |
139620 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48261 |
48874 |
+ |
614 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtacggaa
51 acctgctaag tgataacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagt ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaattac gttgtgttgg taatggaact ccctcgaaat
251 tatagaaaga agggctttat acatctaata cacacgtata gatactcaga
301 tagcaaacga ttaatcatag aacccatatc ataatatagg ttctttattt
351 tattttttag aatgaaatta ggaatgatta tgaaatataa aattctgaat
401 tttttttaga attattgtga atccattcca atcgaatatt gagtaatcaa
451 atccttcaat tcattgtttt gagatcttca aaaaagtgga ttaatcgaac
501 gaggataaag agagagtccc attctacatg tcaatactga caacaatgaa
551 atttatagta aaaggaaaat ccgtcgactt tataagtcgt gagggttcaa
601 gtccctctat cccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.77e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
614 |
595 |
2.77e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.