Match details
Record ID: |
OQ791226.1 |
Database: |
nt |
Go to original record |
Description: |
Temochloa sp. CYZ-2023b chloroplast, complete genome. |
Taxon: |
Temochloa sp. CYZ-2023b |
Original size: |
139324 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48557 |
49170 |
+ |
614 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaatttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagt ggttctcgaa
151 ctagaatcca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg agttgattac gttgtgttgg tagtggaact ccctctaaat
251 tagagaaagt aaggggttta tacatctaat acacacatat ggatactgac
301 atagcaaacg attaatcaca gaacccatat cataatatag gttctttatt
351 cttttttaga atgaaattag gaatgattat gaaatagaaa attcagaatt
401 ttttttagaa ttattgtgaa tccatcccaa tcgaatattg agtaatcaaa
451 tccttcaatt catagttttc gagatctttt aaaaagtgga ttaatcggac
501 gaggataaag agagagtccc attctacatg tcaatactga caacaatgaa
551 atttctagta aaaggaaaat ccgtcgactt tataagtcgt gagggttcaa
601 gtccctctat cccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.77e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
614 |
595 |
2.77e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.