Amplicon details

Amplicon:

614 bp
1     cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51    acctgctaag tggtaatttc caaattcaga gaaaccctgg aattaaaaaa
101   gggcaatcct gagccaaatc cgtgttttga gaaaacaagt ggttctcgaa
151   ctagaatcca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201   taacgaatcg agttgattac gttgtgttgg tagtggaact ccctctaaat
251   tagagaaagt aaggggttta tacatctaat acacacatat ggatactgac
301   atagcaaacg attaatcaca gaacccatat cataatatag gttctttatt
351   cttttttaga atgaaattag gaatgattat gaaatagaaa attcagaatt
401   ttttttagaa ttattgtgaa tccatcccaa tcgaatattg agtaatcaaa
451   tccttcaatt catagttttc gagatctttt aaaaagtgga ttaatcggac
501   gaggataaag agagagtccc attctacatg tcaatactga caacaatgaa
551   atttctagta aaaggaaaat ccgtcgactt tataagtcgt gagggttcaa
601   gtccctctat cccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OQ791222.1 nt Temochloa sp. CYZ-2023b chloroplast... 139428 bp Temochloa sp. CYZ-2023b QL-PLN-00-007 614 bp View
OQ791226.1 nt Temochloa sp. CYZ-2023b chloroplast... 139324 bp Temochloa sp. CYZ-2023b QL-PLN-00-007 614 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.