European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OQ130031.1 nt Sinobambusa striata chloroplast, co... 139749 bp Sinobambusa striata QL-PLN-00-007 614 bp View
OQ160796.1 nt Sinobambusa tootsik f. albostriata ... 139678 bp Sinobambusa tootsik f. albostriata QL-PLN-00-007 614 bp View
OQ220334.1 nt Sinobambusa intermedia chloroplast,... 139797 bp Sinobambusa intermedia QL-PLN-00-007 614 bp View
OQ236108.1 nt Sinobambusa tootsik var. laeta chlo... 139709 bp Sinobambusa tootsik var. laeta QL-PLN-00-007 614 bp View
OQ267655.1 nt Petrocodon sp. LF-2023a isolate WF1... 969 bp Petrocodon sp. LF-2023a QL-PLN-00-007 550 bp View
OQ286031.1 nt Thladiantha nudiflora chloroplast, ... 156824 bp Thladiantha nudiflora QL-PLN-00-007 621 bp View
OQ348024.1 nt Kalopanax septemlobus plastid, comp... 156502 bp Kalopanax septemlobus QL-PLN-00-007 586 bp View
OQ390024.2 nt Persicaria capitata chloroplast, co... 158826 bp Persicaria capitata QL-PLN-00-007 592 bp View
OQ411258.1 nt Fritillaria taipaiensis chloroplast... 151701 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
OQ433930.1 nt Fritillaria taipaiensis isolate E2 ... 151704 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
OQ433931.1 nt Fritillaria taipaiensis isolate E3 ... 151701 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
OQ434193.1 nt Galium trifidum isolate glu125 chlo... 154795 bp Galium trifidum QL-PLN-00-007 597 bp View
OQ442842.1 nt Cucurbita moschata chloroplast, com... 157592 bp Cucurbita moschata QL-PLN-00-007 543 bp View
OQ459817.1 nt Lundia spruceana voucher Lohmann 61... 157200 bp Lundia spruceana QL-PLN-00-007 566 bp View
OQ473886.1 nt Nicotiana tabacum isolate 7-CX14 ch... 155942 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
OQ473887.1 nt Nicotiana tabacum isolate 189802E-H... 155942 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
OQ473888.1 nt Nicotiana tabacum isolate Hainan2 c... 155942 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
OQ473889.1 nt Nicotiana tabacum isolate Hainan3 c... 155942 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
OQ473890.1 nt Nicotiana tabacum isolate PilotoCub... 155942 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
OQ564499.1 nt Veronica arvensis chloroplast, comp... 149381 bp Veronica arvensis QL-PLN-00-007 575 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.